Resources:

• Plasmid request

• The validated histone modifications antibodies

• The validated transcription factor antibodies

• Methods and Protocols

• Microarray Protocols
• microarrays.org
• Technical Forum

• Domain ChIRP
• SeqFold: Genome-scale reconstruction of RNA secondary structure integrating experimental measurements
• Parallel Analysis of RNA structure
• Total RNA isolation from Formaldehyde Fixed Paraffin-Embedded tissues (FFPE)
• Total RNA Isolation and Purification for cDNA microarray
• mRNA Isolation and Purification for cDNA microarray
• RNA pull down assay using recombinant proteins and cell lysate

• ATAC-seq
• DNA extraction from Formaldehyde Fixed Paraffin-embedded Tissue (FFPE)
• DNA Isolation from Frozen Tissue
• DNA extraction from the organic phase of Trizol reagent after RNA isolation

• mRNA isolation for cDNA library construction

• HiChIP Protocol

• ChIRP-Seq